SPatt: Statistics for Patterns

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Credits for SPatt (work in progress)

Contributors

Gregory Nuel (homepage, ) is the main contributor to this project and should be contacted for any question or request regarding SPatt. Note that several persons also contributed to SPatt. To name some of them: Vincent Miele, Mark Hoebeke, and Charles Vejnar.

How to cite SPatt

If you are using SPatt for any scientific application, please cite at least one of these:

• G. Nuel (2011). Significance Score of Motifs in Biological Sequences. Bioinformatics - Trends and Methodologies, Mahmood A. Mahdavi (Ed.) | www | ISBN: 978-953-307-282-1, InTech.
  (general reference, should be cited by default)
• G. Nuel, L. Regad, J. Martin, A.-C. Camproux (2010). Exact distribution of a pattern in a set of random sequences generated by a Markov source: applications to biological data. Algorithms for Molecular Biology, 5:15.
  (for the computation in a set of sequences)
• G. Nuel (2010). On the first k moments of the random count of a pattern in a multi-states sequence generated by a Markov source. Journal of Applied Probability, 47(4):1105-1123.
  (for moment computations)
• G. Nuel (2008). Pattern Markov chains: optimal Markov chain embedding through deterministic finite automata. Journal of Applied Probability, 45(1):226-243.
  (for the automaton approach)